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Adam, Matthias (2009) Multi-level complexities in technological development: Competing strategies for drug discovery. [Preprint]

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Austin, Christopher J. (2015) The Dispositional Genome: Primus Inter Pares. [Preprint]

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Baetu, Tudor (2010) A defense of syntax-based gene concepts in postgenomics: ‘Genes as modular subroutines in the master genomic program’. In: UNSPECIFIED.

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Bartol, Jordan (2012) Re-Examining the Gene in Personalized Genomics. [Published Article or Volume]

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Bechtel, William (2012) From molecules to behavior and the clinic: Integration in Chronobiology. [Preprint]

Bechtel, William (2012) Understanding Biological Mechanisms: Using Illustrations from Circadian Rhythm Research. [Preprint]

Bechtel, William and Abrahamsen, Adele (2013) Diagrams as Vehicles for Scientific Reasoning. [Preprint]

Bechtel, William and Abrahamsen, Adele (2012) Thinking Dynamically About Biological Mechanisms: Networks of Coupled Oscillators. [Preprint]

Birch, Jonathan (2014) Gene mobility and the concept of relatedness. [Preprint]

Bogen, Jim and Machamer, Peter (2010) Mechanistic Information and Causal Continuity. [Preprint]

Brigandt, Ingo (2015) Do We Need a 'Theory' of Development? [Preprint]

Brigandt, Ingo (2009) The Epistemic Goal of a Concept: Accounting for the Rationality of Semantic Change and Variation. [Preprint]

Brigandt, Ingo (2011) Explanation in Biology: Reduction, Pluralism, and Explanatory Aims. [Preprint]

Brigandt, Ingo (2013) Systems Biology and the Integration of Mechanistic Explanation and Mathematical Explanation. [Preprint]

Brigandt, Ingo (2004) An alternative to Kitcher's theory of conceptual progress and his account of the change of the gene concept. [Preprint]

Burian, Richard M. (2008) On microRNA and the Need for Exploratory Experimentation in Post-Genomic Molecular Biology. [Preprint]

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Dietrich, Michael R. and Millstein, Roberta L. (2007) The Role of Causal Processes in the Neutral and Nearly Neutral Theories. [Preprint]

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Elliott, Tyler A. and Linquist, Stefan and Gregory, T. Ryan (2014) Conceptual and empirical challenges of ascribing functions to transposable elements. [Preprint]

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Fagan, Melinda B. (2012) The stem cell uncertainty principle. In: UNSPECIFIED.

Frost-Arnold, Greg (2004) How to be an Anti-Reductionist about Developmental Biology: Response to Laubichler and Wagner. [Preprint]

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Giere, Ronald (2009) Representing with Physical Models. [Preprint]

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Goddiksen, Mads (2014) Explanatory standards in biology and physics textbooks: The case of polymers. [Preprint]

Godfrey-Smith, Peter (2013) Sender-Receiver Systems Within and Between Organisms. In: UNSPECIFIED.

Griffiths, Paul and Gray, Russell (2002) The Developmental Systems Perspective: Organism-environment systems as units of development and evolution. [Preprint]

Griffiths, Paul and Tabery, James (2008) Behavioral Genetics and Development: Historical and Conceptual Causes of Controversy. [Preprint]

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Griffiths, Paul E and Stotz, Karola (2005) Gene. [Preprint]

Griffiths, Paul E and Stotz, Karola (2006) Genes in the postgenomic era. [Preprint]

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Hall, Melinda (2013) Mere Deviation, Critically Assessing Prenatal Testing. In: UNSPECIFIED.

Hicks, Daniel (2015) Epistemological Depth in a GM Crops Controversy. [Preprint]

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Jantzen, Benjamin and Danks, David (2008) Biological Codes and Topological Causation. [Preprint]

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Kistler, Max (2007) Mechanisms and Downward Causation. In: UNSPECIFIED.

Knuuttila, Tarja and Loettgers, Andrea (2010) Modeling and experimenting: The combinational strategy in synthetic biology. In: UNSPECIFIED.

Knuuttila, Tarja and Loettgers, Andrea (2012) Synthetic Modeling and Mechanistic Account: Material Recombination and Beyond. In: UNSPECIFIED.

Knuuttila, Tarja and Loettgers, Andrea (2011) Synthetic Modeling and the Functional Role of Noise. In: UNSPECIFIED.

Knuuttila, Tarja and Loettgers, Andrea (2013) Varieties of Noise: Analogical Reasoning in Synthetic Biology. [Preprint]

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Leonelli, Sabina (2008) On the Locality of Data and Claims about Phenomena. In: UNSPECIFIED.

Linquist, Stefan and Cottenie, Karl and Elliott, Tyler and Saylor, Brent and Kremer, Stefan and Gregory, T. Ryan (2015) Applying ecological models to communities of genetic elements: the case of neutral theory. [Preprint]

Linquist, Stefan and Saylor, Brent and Cottenie, Karl and Elliott, Tyler A. and Kremer, Stefan C. and Gregory, T. Ryan (2013) Distinguishing ecological from evolutionary approaches to transposable elements. [Preprint]

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Malaterre, Christophe (2009) Can synthetic biology shed light on the origin of life? [Preprint]

Malaterre, Christophe (2011) Making Sense of Downward Causation in Manipulationism. With Illustrations from Cancer Research. [Published Article or Volume]

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Northcott, Robert (2008) Innateness and Science. In: UNSPECIFIED.

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O'Malley, Maureen (2008) Exploratory experimentation and scientific practice: Metagenomics and the proteorhodopsin case. [Preprint]

O'Malley, Maureen A. and Brigandt, Ingo and Love, Alan C. and Crawford, John W. and Gilbert, Jack A. and Knight, Rob and Mitchell, Sandra D. and Rohwer, Forest (2014) Multilevel Research Strategies and Biological Systems. In: UNSPECIFIED.

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Pradeu, Thomas (2013) Immunity and the emergence of individuality. [Published Article or Volume]

Pradeu, Thomas (2011) A Mixed Self: The Role of Symbiosis in Development. [Published Article or Volume]

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Pradeu, Thomas (2009) The Organism in Developmental System Theory (DST). [Preprint]

Pradeu, Thomas (2010) What is an organism? An immunological answer. [Preprint]

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Pradeu, Thomas and Jaeger, Sébastien and Vivier, Eric (2013) The speed of change: towards a discontinuity theory of immunity? [Published Article or Volume]

Pradeu, Thomas and Kostyrka, Gladys and Dupré, John (2016) Understanding viruses: Philosophical investigations. [Published Article or Volume]

Pradeu, Thomas and Laplane, Lucie and Prévot, Karine and Hoquet, Thierry and Reynaud, Valentine and Fusco, Giuseppe and Minelli, Alessandro and Orgogozo, Virginie and Vervoort, Michel (2016) Defining "Development". [Published Article or Volume]

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Schindler, Samuel (2007) Model, Theory, and Evidence in the Discovery of the DNA Structure. In: UNSPECIFIED.

Scholl, Raphael and Nickelsen, Kärin (2014) Discovery of causal mechanisms: Oxidative phosphorylation and the Calvin-Benson cycle. [Published Article or Volume]

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Stotz, Karola and Griffiths, Paul E. and Knight, Rob (2004) How Biologists Conceptualize Genes: An empirical study. [Preprint]

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Suárez, Javier (2016) Bacterial species pluralism in the light of medicine and endosymbiosis. [Published Article or Volume]

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Tabery, James (2007) Biometric and Developmental Gene-Environment Interaction: Looking Back, Moving Forward. [Preprint]

Tabery, James (2008) Difference Mechanisms. In: UNSPECIFIED.

Tabery, James (2008) Interactive Predispositions. In: UNSPECIFIED.

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Waters, C. Kenneth (2008) Beyond Theoretical Reduction and Layer-Cake Antireduction: How DNA Retooled Genetics and Transformed Biological Practice. [Preprint]

Waters, C. Kenneth (2007) Causes that Make a Difference. [Preprint]

Waters, C. Kenneth (2006) How Practical Know-how Contextualizes Theoretical Knowledge: Exporting Causal Knowledge from Laboratory to Nature. [Preprint]

Waters, C. Kenneth (2016) No General Structure. [Preprint]

Waters, C. Kenneth (2013) Shifting Attention From Theory to Practice in Philosophy of Biology. [Preprint]

Werndl, Charlotte (2012) Do Microbes Question Standard Thinking in the Philosophy of Biology? Critical Notice of John Dupré "Processes of Life – Essays in the Philosophy of Biology". [Preprint]

Wieber, Frederic (2009) Theoretical technologies in an “experimental” setting: empirical modeling of proteinic objects and simulation of their dynamics within scientific collaborations around a supercomputer. In: UNSPECIFIED.

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Woodward, James (2013) Mechanistic Explanation:Its Scope and Limits. [Published Article or Volume]