Items where Author is "Faeder, JR"

Article

Donovan, RM and Tapia, JJ and Sullivan, DP and Faeder, JR and Murphy, RF and Dittrich, M and Zuckerman, DM (2016) Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories. PLoS Computational Biology, 12 (2). ISSN 1553-734X

Wenskovitch, JE and Harris, LA and Tapia, JJ and Faeder, JR and Marai, GE (2014) MOSBIE: A tool for comparison and analysis of rule-based biochemical models. BMC Bioinformatics, 15 (1).

Hogg, JS and Harris, LA and Stover, LJ and Nair, NS and Faeder, JR (2014) Exact Hybrid Particle/Population Simulation of Rule-Based Models of Biochemical Systems. PLoS Computational Biology, 10 (4). ISSN 1553-734X

Horton, AA and Wang, B and Camp, L and Price, MS and Arshi, A and Nagy, M and Nadler, SA and Faeder, JR and Luckhart, S (2011) The mitogen-activated protein kinome from Anopheles gambiae: Identification, phylogeny and functional characterization of the ERK, JNK and p38 MAP kinases. BMC Genomics, 12.

Faeder, JR (2011) Toward a comprehensive language for biological systems. BMC Biology, 9.

Gong, H and Zuliani, P and Komuravelli, A and Faeder, JR and Clarke, EM (2010) Analysis and verification of the HMGB1 signaling pathway. BMC Bioinformatics, 11 (SUPPL.).

Barua, D and Faeder, JR and Haugh, JM (2009) A Bipolar Clamp Mechanism for Activation of Jak-Family Protein Tyrosine Kinases. PLoS Computational Biology, 5 (4). ISSN 1553-734X