Items where Author is "Benos, PV"

Article

Sedgewick, AJ and Shi, I and Donovan, RM and Benos, PV (2016) Learning mixed graphical models with separate sparsity parameters and stability-based model selection. BMC Bioinformatics, 17 (5).

Villaruz, LC and Huang, G and Romkes, M and Kirkwood, JM and Buch, SC and Nukui, T and Flaherty, KT and Lee, SJ and Wilson, MA and Nathanson, KL and Benos, PV and Tawbi, HA (2015) MicroRNA expression profiling predicts clinical outcome of carboplatin/paclitaxelbased therapy in metastatic melanoma treated on the ECOG-ACRIN trial E2603. Clinical Epigenetics, 7 (1). ISSN 1868-7075

Jain, S and Kapetanaki, MG and Raghavachari, N and Woodhouse, K and Yu, G and Barge, S and Coronnello, C and Benos, PV and Kato, GJ and Kaminski, N and Gladwin, MT (2013) Expression of Regulatory Platelet MicroRNAs in Patients with Sickle Cell Disease. PLoS ONE, 8 (4).

Coronnello, C and Hartmaier, R and Arora, A and Huleihel, L and Pandit, KV and Bais, AS and Butterworth, M and Kaminski, N and Stormo, GD and Oesterreich, S and Benos, PV (2012) Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density. PLoS Computational Biology, 8 (12). ISSN 1553-734X

Watters, RJ and Benos, PV and Oesterreich, S (2012) To bind or not to bind - FoxA1 determines estrogen receptor action in breast cancer progression. Breast Cancer Research, 14 (3). ISSN 1465-5411

Kadri, S and Hinman, VF and Benos, PV (2011) RNA deep sequencing reveals differential MicroRNA expression during development of sea urchin and sea star. PLoS ONE, 6 (12).

Zinman, G and Brower-Sinning, R and Emeche, CH and Ernst, J and Huang, GTW and Mahony, S and Myers, AJ and O'Dee, DM and Flynn, JAL and Nau, GJ and Ross, TM and Salter, RD and Benos, PV and Bar Joseph, Z and Morel, PA (2011) Large scale comparison of innate responses to viral and bacterial pathogens in mouse and macaque. PLoS ONE, 6 (7).

Zhang, Y and Handley, D and Kaplan, T and Yu, H and Bais, AS and Richards, T and Pandit, KV and Zeng, Q and Benos, PV and Friedman, N and Eickelberg, O and Kaminski, N (2011) High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells. PLoS ONE, 6 (5).

Corcoran, DL and Pandit, KV and Gordon, B and Bhattacharjee, A and Kaminski, N and Benos, PV (2009) Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data. PLoS ONE, 4 (4).

Mahony, S and Auron, PE and Benos, PV (2007) DNA familial binding profiles made easy: Comparison of various motif alignment and clustering strategies. PLoS Computational Biology, 3 (3). 0578 - 0591. ISSN 1553-734X

Belov, K and Deakin, JE and Papenfuss, AT and Baker, ML and Melman, SD and Siddle, HV and Gouin, N and Goode, DL and Sargeant, TJ and Robinson, MD and Wakefield, MJ and Mahony, S and Cross, JGR and Benos, PV and Samollow, PB and Speed, TP and Marshall Graves, JA and Miller, RD (2006) Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex. PLoS Biology, 4 (3). 0317 - 0328. ISSN 1545-7885